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Snaphic2

Web1 Jun 2024 · Here we introduce SnapHiC2, which adapts a sliding window approximation when imputing missing contacts in each single cell and reduces both memory usage and computational time by 70%. SnapHiC2 can identify 5 Kb resolution chromatin loops with high sensitivity and accuracy and help to suggest target genes for GWAS variants in a cell … Web4 Oct 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data Computational and Structural Biotechnology Journal June 1, 2024 See publication Leveraging TOPMed imputation server and...

SnapHiC2: A computationally efficient loop caller for single cell Hi …

WebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data Computational and Structural Biotechnology Journal 2024 Journal article DOI: 10.1016/j.csbj.2024.05.046 Contributors : Xiaoqi Li; Lindsay Lee; Armen Abnousi; Miao Yu; Weifang Liu; Le Huang; Yun Li; Ming Hu Show more detail Source : Crossref Web1 Jul 2024 · SnapHiC2: A computationally efficient loop caller for single cell Hi-C data 2024, Computational and Structural Biotechnology Journal Show abstract Understanding the function of regulatory DNA interactions in the interpretation of non-coding GWAS variants 2024, Frontiers in Cell and Developmental Biology fnbo foundation https://removablesonline.com

Department of Genetics Publications for June 5th – 18th, 2024

WebThe Virtual Health Library is a collection of scientific and technical information sources in health organized, and stored in electronic format in the countries of the Region of Latin America and the Caribbean, universally accessible on the Internet and compatible with international databases. WebNumber: Citing Articles: 1: Zhao S, Hong CKY, Myers CA, Granas DM, White MA, Corbo JC, Cohen BA. A single-cell massively parallel reporter assay detects cell-type-specific gene re Web26 Aug 2024 · SnapHiC-D, a computational pipeline to identify differential chromatin contacts (DCCs) between two scHi-C datasets, is presented and it is demonstrated that DCCs detected in the cortical and hippocampal cell types are generally correlated with cell-type-specific gene expression patterns and epigenomic features. PDF. greentech robotics

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Snaphic2

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Web6 Oct 2024 · The three-dimensional (3D) structure of chromosomes influences essential biological processes such as gene expression, genome replication, and DNA damage repair and has been implicated in many developmental and degenerative diseases. In the past two centuries, two complementary genres of technology—microscopy, such as fluorescence in … WebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data X Li, L Lee, A Abnousi, M Yu, W Liu, L Huang, Y Li, M Hu Computational and Structural Biotechnology Journal 20, 2778-2783...

Snaphic2

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Web1 Jul 2014 · Objective Neurodevelopmental disorders presumably involve events that occur during brain development. The authors hypothesized that neuropsychiatric disorders considered to be developmental in etiology are associated with susceptibility genes that are relatively upregulated during fetal life (i.e., differentially expressed). Method The authors … WebNuclear condensates of YAP fusion proteins alter transcription to drive ependymoma tumourigenesis.

WebSee tweets, replies, photos and videos from @erin_aboelnour Twitter profile. 288 Followers, 669 Following. Mom and #firstgen scientist interested in enhancer biology and transcription in #4Dgenome and #corticogenesis; Go #mancity! @PioneerCampus @BonevLab WebA Biblioteca Virtual em Saúde é uma colecao de fontes de informacao científica e técnica em saúde organizada e armazenada em formato eletrônico nos países da Região Latino-Americana e do Caribe, acessíveis de forma universal na Internet de modo compatível com as bases internacionais.

Web1 Sep 2024 · Here, we describe Single-Nucleus Analysis Pipeline for Hi-C (SnapHiC), a method that can identify chromatin loops at high resolution and accuracy from scHi-C data. Using scHi-C data from 742 mouse embryonic stem cells, we benchmark SnapHiC against a number of computational tools developed for mapping chromatin loops and interactions … Web1 Jan 2024 · SnapHiC2 uses sliding windows and reduces both computing time and memory by 70%. SnapHiC2 can identify 5 Kb resolution chromatin loops with high sensitivity and accuracy. SnapHiC2 can help to predict putative target genes of GWAS variants in a cell-type-specific manner.

WebOur recently developed SnapHiC pipeline provides the first tool to map chromatin loops from scHi-C data, but it is computationally intensive. Here we introduce SnapHiC2, which adapts a sliding window approximation when imputing missing contacts in each single cell and reduces both memory usage and computational time by 70%.

green tech saco maineWebSingle-cell Hi-C provides a holistic high-resolution view into the 3D structure of our genetic blueprint. (Left) DNA fluorescence in situ hybridization (FISH) provided the first look into genome organization in the cell nucleus by directly measuring 3D coordinates (i.e., x, y, and z) of various genomic loci (or entire chromosomes, in the case of chromosome painting) … fnb of osakisWebTweets and Medias erin_aboelnour Twitter ( Dr. Erin Aboelnour ) Munich, Bavaria greentech romaniaWebSnapHiC2: A computationally efficient loop caller for single cell Hi-C data Overview of attention for article published in Computational and Structural Biotechnology Journal, January 2024 Altmetric Badge fnb of omaha visaWebSnapHiC2: a computationally efficient loop caller for single cell Hi-C data. Computational and Structural Biotechnology Journal. 20:2778-2783. *Co-first author. #Co-corresponding author. 25. Huang L*, Yang Y*, Li G, Jiang M, Wen J, Abnousi A, Rosen J, Hu M# and Li Y# (2024). A systematic evaluation of Hi-C data enhancement methods for enhancing ... fnb of ottawaWebI am now an Assistant Staff at Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation. I am also an Assistant Professor (non-tenure track) at Department of Medicine, Cleveland Clinic Lerner College of Medicine at Case Western Reserve University, an Associate Member of Molecular Oncology Program at Case … fnb of pa addressWebUse the gear icon on the search box to create complex queries greentech safety award